Tues. Jul. 23, 2019 Salmon + sea lice methylomes and Oyster Proteomics

Oyster Proteomics

Salmon + sea lice methylomes

  • Still running TrimGalore! (probably will be around 30 hours to complete)
  • Prepared Bismark genomes on Mox:
    • Salmon genome prep
      • script location: /gscratch/srlab/strigg/jobs/BuildSalmo_BmrkGenome.sh
      • bismark genome location: /gscratch/srlab/strigg/data/Ssalar/GENOMES
    • Sea lice genome prep
      • script location: /gscratch/srlab/strigg/jobs/BuildCalig_BmrkGenome.sh
      • bismark genome location: /gscratch/srlab/strigg/data/Caligus/GENOMES
  • Determine bismark alignment settings to use
Written on July 23, 2019