Sea lice and Salmon data

  • Start full alignments using pre-determined settings on Mox
    • Created scripts:
    • Started running @ 11:40am
      • takes about 4.5-5 hours/sample so alignments should be done in ~4-6 days including rest of analysis (we’ll see).
  • copy data from Ostrich desktop to Gannet
    • note: this is the same data as was copied to Mox /gscratch/scrubbed/strigg/TRIMG_adapt_5bp (see this post)
     	rsync --archive --progress --verbose * /Volumes/web/metacarcinus/Salmo_Calig/analyses/20190806_TrimGalore/ 
      rsync --archive --progress --verbose /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/
  • copy data from Mox to Gannet

      rsync --archive --progress --verbose /gscratch/scrubbed/strigg/analyses/20190809_100K_Calig_trimG
      rsync --archive --progress --verbose /gscratch/scrubbed/strigg/analyses/20190809_100K_Salmo
      rsync --archive --progress --verbose /gscratch/scrubbed/strigg/analyses/20190809_100K_Salmo_trimME
      rsync --archive --progress --verbose /gscratch/srlab/strigg/jobs/

Geoduck Broodstock conditioning manuscript

  • Go through water chem (nov 2018- mar 2019)
    • Apex data:
      • 11/21 - 2/1 here
      • 2/1 - 3/17 need to download
    • Discrete measurments here
    • Titrator:
    • NEED TO:
      • Run cumulative R analysis of all titrator data
      • Consolidate all data into one table
  • Go through survival data of var. low pH animals
  • Go through respirometry data and see if it’s usable
  • Write all in methods and results of manuscript

Oyster proteomics manuscript

  • decide on journal
  • continue comparing results to literature