Friday. Sept 28, 2018

##My goals for today

  • work on Bismark alignment comparison
    • how does Bismark compare to Methylpy?
      • reference papers:
      • jupyter notebook
      • install methylpy
      • try bowtie vs. minimap
      • make genomes
    • Insert size alignment setting
      • in bowtie, this is the -I parameter
        • default is 0; in methylpy it’s 20.
  • Roberto’s last day lunch @12:30


Written on September 28, 2018