Aug. 21 Conference call
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Tues. Aug. 20, 2019 Pt. Whitney Juv. Geoduck resistance to stress plans
Revised plans to address pseudo-replication concerns:
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Fri. Aug. 16, 2019 Geoduck genome paper BS analysis
Methylkit analysis of steven’s alignments
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Thur. Aug. 15, 2019 Pt. Whitney Juv. Exp. plans, FFAR call
Equipment brought to hatchery:
HgCl2 (stored in safety cabinet
100um silos (15 total)
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Aug. 13-14, 2019, Salmon-Sea lice analysis and geoduck project
Sea lice and Salmon data
Start full alignments using pre-determined settings on Mox
Created scripts:
Salmon: 20190814_BmrkSsalar.sh
Sea lice: 20190814_BmrkCalig.sh
Started running 20190814_BmrkSsalar.sh @ 11:40am
takes about 4.5-5 hours/sample so alignments should be done in ~4-6 days including rest of analysis (we’ll see).
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