SA Trigg*, YR Venkataraman*, MR Gavery, SB Roberts, D Bhattacharya, A Downey-Wall, JM Eirin-Lopez, KM Johnson, KE Lotterhos, JR Puritz, and HM Putnam. (2021) Invertebrate methylomes provide insight into mechanisms of environmental tolerance and reveal methodological biases. Mol Ecol Resources (In review) bioRxiv. https://doi.org/10.1101/2021.03.29.437539.
SA Trigg. (2021) Diversity in animal response to environmental chnage. Data Science Coast to Coast 2021 seminar series. Academic Data Science Alliance. Presentation. https://github.com/shellytrigg/talk-Coast2Coast2021
SA Trigg. (2021) Exploring the tolerance of Pacific geoduck to low pH through comparative physiology, genomics, and DNA methylation. The Society for Integrative and Comparative Biology (SICB) 2021 Virtual Annual Meeting. Presentation. https://github.com/shellytrigg/talk-SICB2021
SA Trigg, G Nunez-Acuna, V Valenzuela-Munoz, D Valenzuela-Miranda, C Gallardo-Escárate, and SB Roberts. (2020) Epigenomic and transcriptomic relationships in Atlantic salmon infested with sea lice under a changing environment. (In preparation).
HM Putnam, SA Trigg, SJ White, LH Spencer, B Vadopalas, A Natarajan, J Hetzel, E Jaeger, J Soohoo, C Gallardo-Escárate, FW Goetz, and SB Roberts. (2020) Environmental memory through dynamic DNA methylation provides acclimatization of geoduck clams to ocean acidification. (In preparation).
SA Trigg, DS Busch, P McElhany, M Maher, D Perez, C O’Brien, and KM Nichols. (2020) Searching for signs of resilience in over-wintering juvenile pteropods to ocean acidification and deoxygenation. https://doi.org/10.6084/m9.figshare.12440192.v1. (In preparation).
SA Trigg. (2020) Environmental influence on the Atlantic salmon epigenome during sea lice infestation. figshare. Presentation. https://doi.org/10.6084/m9.figshare.10882775.v1.
SA Trigg, KM Mitchell, R Elliott Thompson, B Eudeline, B Vadopalas, EB Timmins-Schiffman, SB Roberts. (2020) Temporal proteomic profiling reveals critical developmental processes and temperature-influenced differences in a bivalve mollusc. BMC Genomics. https://doi.org/10.1186/s12864-020-07127-3.
SA Trigg. (2020) A protein inventory reveals mechanisms of temperature impact on oyster development. figshare. Presentation. https://doi.org/10.6084/m9.figshare.11839359.v1.
SA Trigg. (2020) Influence of ocean acidification on DNA methylation patterns in geoduck. figshare. Presentation. https://doi.org/10.6084/m9.figshare.11839356.v1.
BC Willige, M Zander, A Phan, RM Garza, SA Trigg, Y He, JR Nery, H Chen, JR Ecker, and J Chory. (2020) PHYTOCHROME INTERACTING FACTORs trigger environmentally responsive chromatin dynamics. Nature Genetics. (In review). bioRxiv https://doi.org/10.1101/826842.
ET Montaño, [32 others], SA Trigg, K Pogliano, and J Pogliano. (2020) Isolation and Characterization of Streptomyces Bacteriophages and the Biosynthetic Arsenals of their Associated Hosts. PLoS One. (In review). bioRxiv https://doi.org/10.1101/2020.06.22.164533
SA Trigg, P McElhany, M Maher, D Perez, DS Busch, and KM Nichols. (2019) Uncovering mechanisms of global ocean change effects on Dungeness crab (Cancer magister) through metabolomics analysis. Scientific Reports. https://doi.org/10.1101/574798.
SA Trigg. (2019) Temperature-influenced protein network differences in the Pacific Oyster (Crossostrea gigas) during larval development. Cold Spring Harbor Network Biology Conference. figshare. Poster. https://doi.org/10.6084/m9.figshare.7853573.v1
SA Trigg. (2018) High-resolution molecular networks from novel’omics’ approaches elucidate survival strategies in organsisms from land to sea. UC San Diego. ProQuest ID: Trigg_ucsd_0033D_17575. Merritt ID: ark:/13030/m5t77f99. https://escholarship.org/uc/item/0491n31k
SA Trigg, RM Garza, A MacWilliams, JR Nery, A Bartlett, R Castanon, A Goubil, J Feeney, R O’Malley, SC Huang, ZZ Zhang, M Galli, and JR Ecker (2017) CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Nat Methods. 14(8):819-825. https://doi.org/10.1038/nmeth.4343.
SA Trigg, RM Garza, A MacWilliams, JR Nery, A Bartlett, R Castanon, A Goubil, J Feeney, R O’Malley, SC Huang, ZZ Zhang, M Galli, and JR Ecker (2017) CrY2H-seq interactome screening. Protoc. Exch. https://doi.org/10.1038/protex.2017.058.
X Yang, [15 others], SA Trigg, [20 others], and M Vidal. (2016) Widespread expansion of protein interaction capabilities by alternative splicing. Cell. 164(4):805-817. https://doi.org/10.1016/j.cell.2016.01.029.
T Rolland, [53 others], SA Trigg, [14 others], and M Vidal. (2014) A proteome-scale map of the human interactome network. Cell. 159(5):1212-1226. https://doi.org/10.1016/j.cell.2014.10.050.
R Corominas, [8 others], SA Trigg, [18 others], M Vidal, and LM Iakoucheva. (2014) Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism. Nat commun. 5:3650. https://doi.org/10.1038/ncomms4650.
O Rozenblatt-Rosen, [36 others], S Wanamaker, [13 others], and M Vidal. (2012) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins. Nature. 487(7408):491-495. https://doi.org/10.1038/nature11288.