SA Trigg*, YR Venkataraman*, MR Gavery, SB Roberts, D Bhattacharya, A Downey-Wall, JM Eirin-Lopez, KM Johnson, KE Lotterhos, JR Puritz, and HM Putnam. (2021) Invertebrate methylomes provide insight into mechanisms of environmental tolerance and reveal methodological biases. Mol Ecol Resources (In review) bioRxiv. https://doi.org/10.1101/2021.03.29.437539.
SA Trigg. (2021) Exploring the tolerance of Pacific geoduck to low pH through comparative physiology, genomics, and DNA methylation. The Society for Integrative and Comparative Biology (SICB) 2021 Virtual Annual Meeting. Presentation. https://github.com/shellytrigg/talk-SICB2021
SA Trigg, G Nunez-Acuna, V Valenzuela-Munoz, D Valenzuela-Miranda, C Gallardo-Escárate, and SB Roberts. (2020) Epigenomic and transcriptomic relationships in Atlantic salmon infested with sea lice under a changing environment. (In preparation).
HM Putnam, SA Trigg, SJ White, LH Spencer, B Vadopalas, A Natarajan, J Hetzel, E Jaeger, J Soohoo, C Gallardo-Escárate, FW Goetz, and SB Roberts. (2020) Environmental memory through dynamic DNA methylation provides acclimatization of geoduck clams to ocean acidification. (In preparation).
SA Trigg, DS Busch, P McElhany, M Maher, D Perez, C O’Brien, and KM Nichols. (2020) Searching for signs of resilience in over-wintering juvenile pteropods to ocean acidification and deoxygenation. https://doi.org/10.6084/m9.figshare.12440192.v1. (In preparation).
SA Trigg. (2020) Environmental influence on the Atlantic salmon epigenome during sea lice infestation. figshare. Presentation. https://doi.org/10.6084/m9.figshare.10882775.v1.
SA Trigg, KM Mitchell, R Elliott Thompson, B Eudeline, B Vadopalas, EB Timmins-Schiffman, SB Roberts. (2020) Temporal proteomic profiling reveals critical developmental processes and temperature-influenced differences in a bivalve mollusc. BMC Genomics. https://doi.org/10.1186/s12864-020-07127-3.
SA Trigg. (2020) A protein inventory reveals mechanisms of temperature impact on oyster development. figshare. Presentation. https://doi.org/10.6084/m9.figshare.11839359.v1.
SA Trigg. (2020) Influence of ocean acidification on DNA methylation patterns in geoduck. figshare. Presentation. https://doi.org/10.6084/m9.figshare.11839356.v1.
BC Willige, M Zander, A Phan, RM Garza, SA Trigg, Y He, JR Nery, H Chen, JR Ecker, and J Chory. (2020) PHYTOCHROME INTERACTING FACTORs trigger environmentally responsive chromatin dynamics. Nature Genetics. (In review). bioRxiv https://doi.org/10.1101/826842.
ET Montaño, [32 others], SA Trigg, K Pogliano, and J Pogliano. (2020) Isolation and Characterization of Streptomyces Bacteriophages and the Biosynthetic Arsenals of their Associated Hosts. PLoS One. (In review). bioRxiv https://doi.org/10.1101/2020.06.22.164533
SA Trigg, P McElhany, M Maher, D Perez, DS Busch, and KM Nichols. (2019) Uncovering mechanisms of global ocean change effects on Dungeness crab (Cancer magister) through metabolomics analysis. Scientific Reports. https://doi.org/10.1101/574798.
SA Trigg. (2019) Temperature-influenced protein network differences in the Pacific Oyster (Crossostrea gigas) during larval development. Cold Spring Harbor Network Biology Conference. figshare. Poster. https://doi.org/10.6084/m9.figshare.7853573.v1
SA Trigg. (2018) High-resolution molecular networks from novel’omics’ approaches elucidate survival strategies in organsisms from land to sea. UC San Diego. ProQuest ID: Trigg_ucsd_0033D_17575. Merritt ID: ark:/13030/m5t77f99. https://escholarship.org/uc/item/0491n31k
SA Trigg, RM Garza, A MacWilliams, JR Nery, A Bartlett, R Castanon, A Goubil, J Feeney, R O’Malley, SC Huang, ZZ Zhang, M Galli, and JR Ecker (2017) CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Nat Methods. 14(8):819-825. https://doi.org/10.1038/nmeth.4343.
SA Trigg, RM Garza, A MacWilliams, JR Nery, A Bartlett, R Castanon, A Goubil, J Feeney, R O’Malley, SC Huang, ZZ Zhang, M Galli, and JR Ecker (2017) CrY2H-seq interactome screening. Protoc. Exch. https://doi.org/10.1038/protex.2017.058.
X Yang, [15 others], SA Trigg, [20 others], and M Vidal. (2016) Widespread expansion of protein interaction capabilities by alternative splicing. Cell. 164(4):805-817. https://doi.org/10.1016/j.cell.2016.01.029.
T Rolland, [53 others], SA Trigg, [14 others], and M Vidal. (2014) A proteome-scale map of the human interactome network. Cell. 159(5):1212-1226. https://doi.org/10.1016/j.cell.2014.10.050.
R Corominas, [8 others], SA Trigg, [18 others], M Vidal, and LM Iakoucheva. (2014) Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism. Nat commun. 5:3650. https://doi.org/10.1038/ncomms4650.
O Rozenblatt-Rosen, [36 others], S Wanamaker, [13 others], and M Vidal. (2012) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins. Nature. 487(7408):491-495. https://doi.org/10.1038/nature11288.